Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Uterus

Cell type

HeLa

Primary Tissue

Cervix

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

HeLa-S3 cells

protocol

ATAC-seq

enzyme

Transposase-Tn5

cell type

Human adenocarcinoma cells

cell line

HeLa-S3 (CCL-2.2)

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

For each ATAC-seq library, 50,000 cells or the equivalent in mitotic chromatin clusters were used ATAC-seq was performed according to published protocol (Buenrostro et al, Curr. Protoc. Mol. Bio, 2015)

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

35659402

Reads aligned (%)

92.8

Duplicates removed (%)

24.0

Number of peaks

9482 (qval < 1E-05)

hg19

Number of total reads

35659402

Reads aligned (%)

92.1

Duplicates removed (%)

24.8

Number of peaks

9254 (qval < 1E-05)