Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Esrrb

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ZHBTc4
NA
NA

Attributes by original data submitter

Sample

source_name
ZHBTc4 ES cells, +Tet, Day 4
strain
129/Ola
cell line
ZHBTc4
antibody
Esrrb (H6705, Perseus Proteomics)
treatment
Tet
time
4 days

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was enzymatically sheared into fragments with an average size of 300-500 bp using the ChIP-IT Express Enzymatic Kit (Active Motif). Sequencing libraries were prepared from ChIP DNA according to the Illumina protocols. Briefly, ChP DNA was end-repaired, A-tailed, ligated to the adapters, size selected to 200-400 bp and amplified by 18 cycles of PCR. Libraries were sequenced on the Genome Analyzer Iix (Illumina) as single-end 50-bp reads.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
15957625
Reads aligned (%)
97.6
Duplicates removed (%)
7.2
Number of peaks
520 (qval < 1E-05)

mm9

Number of total reads
15957625
Reads aligned (%)
97.4
Duplicates removed (%)
7.3
Number of peaks
492 (qval < 1E-05)

Base call quality data from DBCLS SRA