Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Esrrb

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ZHBTc4
NA
NA

Attributes by original data submitter

Sample

source_name
ZHBTc4 ES cells, +Tet, Day 1
strain
129/Ola
cell line
ZHBTc4
antibody
Esrrb (H6705, Perseus Proteomics)
treatment
Tet
time
1 day

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was enzymatically sheared into fragments with an average size of 300-500 bp using the ChIP-IT Express Enzymatic Kit (Active Motif). Sequencing libraries were prepared from ChIP DNA according to the Illumina protocols. Briefly, ChP DNA was end-repaired, A-tailed, ligated to the adapters, size selected to 200-400 bp and amplified by 18 cycles of PCR. Libraries were sequenced on the Genome Analyzer Iix (Illumina) as single-end 50-bp reads.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
14426535
Reads aligned (%)
96.2
Duplicates removed (%)
10.9
Number of peaks
495 (qval < 1E-05)

mm9

Number of total reads
14426535
Reads aligned (%)
95.9
Duplicates removed (%)
11.0
Number of peaks
519 (qval < 1E-05)

Base call quality data from DBCLS SRA