SRX4975565
ChIP-seq of mus musculus:BMDMs

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

sample_id
TR4PL29_20D
isolate
IF0123
age
86 years
biomaterial_provider
INForMeD Study - Mead Lab
sex
male
tissue
Peripheral Blood
cell_type
cd34+
health_state
patient
disease
myelofibrosis
disease_stage
baseline
sample_type
singlecell
treatment
Ruxolitinib
primer.mix
IF0123_mix
batch
batch_2
plate
TR4PL29
pool
TR4PL29_Q4
CD45RA
1343.526
CD90
1085.077
CD38
3290.288
lineage.viability
4437.162
CD34
24074.09
CD123
2439.231
genotypesall
JAK2_HOM_SF3B1_HET

Sequenced DNA Library

library_name
BMDMs-ChIP-VSV?
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44025033
Reads aligned (%)
0.8
Duplicates removed (%)
4.1
Number of peaks
651 (qval < 1E-05)

hg19

Number of total reads
44025033
Reads aligned (%)
0.8
Duplicates removed (%)
5.4
Number of peaks
623 (qval < 1E-05)

Base call quality data from DBCLS SRA