ChIP-Atlas: SRX4975555

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: No description
Antigen: NA

Cell type

Cell type Class: Blood
Cell type: CD34+
NA: NA

Attributes by original data submitter

Sample

sample_id: TR4PL29_20B
isolate: IF0123
age: 86 years
biomaterial_provider: INForMeD Study - Mead Lab
sex: male
tissue: Peripheral Blood
cell_type: cd34+
health_state: patient
disease: myelofibrosis
disease_stage: baseline
sample_type: singlecell
treatment: Ruxolitinib
primer.mix: IF0123_mix
batch: batch_2
plate: TR4PL29
pool: TR4PL29_Q4
CD45RA: 798.2322
CD90: 426.732
CD38: 15977.75
lineage.viability: 1919.92
CD34: 15092.52
CD123: -721.2559
genotypesall: JAK2_HOM_SF3B1_HET

Sequenced DNA Library

library_name: BMDMs-Input?
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 50235718
Reads aligned (%): 0.8
Duplicates removed (%): 4.3
Number of peaks: 836 (qval < 1E-05)

hg19

Number of total reads: 50235718
Reads aligned (%): 0.8
Duplicates removed (%): 5.8
Number of peaks: 815 (qval < 1E-05)

Base call quality data from DBCLS SRA