SRX4937364
GSM3446334: input CHIP-seq in USP22 wild type, untreated cells, replicate 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116 colorectal cancer cells
cell line
HCT116
factor
input
usp22 status
wt
shRNA
no
treatment
u
replicate
1
antibody
na

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47119714
Reads aligned (%)
91.9
Duplicates removed (%)
0.9
Number of peaks
362 (qval < 1E-05)

hg19

Number of total reads
47119714
Reads aligned (%)
91.4
Duplicates removed (%)
0.9
Number of peaks
526 (qval < 1E-05)

Base call quality data from DBCLS SRA