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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Granulocytic-monocytic progenitors
ATCC
MeSH
RIKEN BRC
SRX4936467
GSM3445902: GMP -Dox ATAC Seq rep2; Mus musculus; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Blood
Cell type
Granulocytic-monocytic progenitors
NA
NA
Attributes by original data submitter
Sample
source_name
GMP -Dox ATAC Seq
strain background
C57BL/6
genotype/variation
r/r iMLL-AF9+
tissue
Bone marrow
cell type
granulocyte monocyte progenitors
preparation
cultured in vitro for two days, untreated
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
RNA was extracted with TRIzol reagent. For ATAC-Seq, libraries were prepared as previously described by Buenrostro et al. Nature Methods (2013). RNA-Seq libraries were prepared using TruSeq Stranded mRNA Library Preparation Kit from Illumina.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
53848682
Reads aligned (%)
75.7
Duplicates removed (%)
22.8
Number of peaks
40060 (qval < 1E-05)
mm9
Number of total reads
53848682
Reads aligned (%)
75.5
Duplicates removed (%)
22.9
Number of peaks
39983 (qval < 1E-05)
Base call quality data from
DBCLS SRA