Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
Treg cells
tissue
CNS
genotype
Blimp1deltaFoxp3
chip antibody
none

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
The cells were isolated from the CNS at the peak of the disease. The cells were digested with collagenase and DNAse to obtain single cell suspensions Nextera DNA Sample Prep Kit FC-121-1030

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
66282658
Reads aligned (%)
87.0
Duplicates removed (%)
87.3
Number of peaks
5564 (qval < 1E-05)

mm9

Number of total reads
66282658
Reads aligned (%)
86.9
Duplicates removed (%)
87.4
Number of peaks
5564 (qval < 1E-05)

Base call quality data from DBCLS SRA