SRX4936141
GSM3445824: GS523 Spleen3.1 WT Tconv ATAC; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Tconv
NA
NA

Attributes by original data submitter

Sample

source_name
Tconv cells
tissue
Spleen
genotype
WT
chip antibody
none

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
The cells were isolated from the CNS at the peak of the disease. The cells were digested with collagenase and DNAse to obtain single cell suspensions Nextera DNA Sample Prep Kit FC-121-1030

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31012056
Reads aligned (%)
89.6
Duplicates removed (%)
40.7
Number of peaks
18542 (qval < 1E-05)

mm9

Number of total reads
31012056
Reads aligned (%)
89.5
Duplicates removed (%)
40.8
Number of peaks
18558 (qval < 1E-05)

Base call quality data from DBCLS SRA