Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
NCI-H1703
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

source_name
H1703 lung cancer cells
cell line
H1703
tissue
lung cancer

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was performed as published (Corces et al. 2017 "An improved ATAC-seq protocol reduced background and enables interrogation of frozen tissues") without any modifications

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
40181395
Reads aligned (%)
67.1
Duplicates removed (%)
10.9
Number of peaks
24948 (qval < 1E-05)

hg19

Number of total reads
40181395
Reads aligned (%)
66.8
Duplicates removed (%)
11.0
Number of peaks
24660 (qval < 1E-05)

Base call quality data from DBCLS SRA