Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Others
Cell type
Utricle hair cells
NA
NA

Attributes by original data submitter

Sample

source_name
Utricle hair cells
tissue
Utricle hair cells
age
4-6 weeks
virus infection
none
strain
Outbred (ICR)
genotype
Ai3; Atoh1-CreERT2 (Gt(ROSA)26Sortm3(CAG-EYFP)Hze/J; Tg(Atoh1-cre/Esr1*)14Fsh)

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
The cell pellet was re-suspended in a transposase-containing reaction mixture complete with 0.05% digitonin prior to tagmentation at 37oC with 1000 rpm agitation for 30 minutes. Next, transposed DNA was purified with a Qiagen PCR MinElute kit (Qiagen 28004). According to Fast-ATAC protocol, with Illumina Nextera kit transposase and custom Illumina adapters.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
47119549
Reads aligned (%)
58.5
Duplicates removed (%)
26.7
Number of peaks
9067 (qval < 1E-05)

mm9

Number of total reads
47119549
Reads aligned (%)
58.4
Duplicates removed (%)
26.8
Number of peaks
9027 (qval < 1E-05)

Base call quality data from DBCLS SRA