Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Biotin

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Raw-Bap-P2A-BirA
cell types
Raw-Bap-P2A-BirA
chip antibody
Streptavidin
strain
BALB/c

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP assays were performed with an Enzymatic Chromatin IP Kit (pierce) according to the manufacturer's instructions.Anti-Flag and Streptavidin were used for protein-DNA complex isolation. RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
10994444
Reads aligned (%)
88.4
Duplicates removed (%)
12.6
Number of peaks
164 (qval < 1E-05)

mm9

Number of total reads
10994444
Reads aligned (%)
88.2
Duplicates removed (%)
12.7
Number of peaks
182 (qval < 1E-05)

Base call quality data from DBCLS SRA