Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Mesenchymal stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Bmi1-deficient MSC cells
strain/background
C57BL/6
genotype/variation
Bmi1-deficient (Prx1-Cre; Bmi1fl/fl)
cell type
Bone marrow mesenchymal stromal cells
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
10,000 Bmi1-deficient MSCs and Control MSCs were sorted and treated with MNase, histone-DNA complexes were isolated with antibody. ChIP DNA were purified for end repair, adaptor ligation and amplification using a NEB Ultra II library preparation kit following the manufacturer's protocols (New England Biolabs, Ipswich, MA).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
10530727
Reads aligned (%)
94.9
Duplicates removed (%)
9.4
Number of peaks
136 (qval < 1E-05)

mm9

Number of total reads
10530727
Reads aligned (%)
94.8
Duplicates removed (%)
9.5
Number of peaks
103 (qval < 1E-05)

Base call quality data from DBCLS SRA