Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Others
Cell type
Mesenchymal stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Ctrl MSC Cells
strain/background
C57BL/6
genotype/variation
Control (Bmi1fl/fl)
cell type
Bone marrow mesenchymal stromal cells
chip antibody
H3K27me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
10,000 Bmi1-deficient MSCs and Control MSCs were sorted and treated with MNase, histone-DNA complexes were isolated with antibody. ChIP DNA were purified for end repair, adaptor ligation and amplification using a NEB Ultra II library preparation kit following the manufacturer's protocols (New England Biolabs, Ipswich, MA).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
12459365
Reads aligned (%)
96.4
Duplicates removed (%)
14.0
Number of peaks
159 (qval < 1E-05)

mm9

Number of total reads
12459365
Reads aligned (%)
96.3
Duplicates removed (%)
14.1
Number of peaks
122 (qval < 1E-05)

Base call quality data from DBCLS SRA