SRX4862444
GSM3426390: WT P2 ATAC rep2; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Gonad
Cell type
Gonocytes
NA
NA

Attributes by original data submitter

Sample

source_name
WT P2 ATAC
strain
C57BL/6
cell type
gonocyte
age
P2

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Library construction was carried out following the original protocol (Buenrostro et al., 2013, Nature Methods) [PMID:24097267].

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39397232
Reads aligned (%)
60.6
Duplicates removed (%)
47.3
Number of peaks
1072 (qval < 1E-05)

mm9

Number of total reads
39397232
Reads aligned (%)
60.5
Duplicates removed (%)
47.4
Number of peaks
1097 (qval < 1E-05)

Base call quality data from DBCLS SRA