SRX4862439
GSM3426385: WT E17.5 ATAC rep1; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Gonad
Cell type
Gonocytes
NA
NA

Attributes by original data submitter

Sample

source_name
WT E17.5 ATAC
strain
C57BL/6
cell type
gonocyte
age
E17.5

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Library construction was carried out following the original protocol (Buenrostro et al., 2013, Nature Methods) [PMID:24097267].

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
43664313
Reads aligned (%)
54.1
Duplicates removed (%)
59.3
Number of peaks
508 (qval < 1E-05)

mm9

Number of total reads
43664313
Reads aligned (%)
54.0
Duplicates removed (%)
59.4
Number of peaks
624 (qval < 1E-05)

Base call quality data from DBCLS SRA