SRX4826338
GSM3425939: KM1 ATAC; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
mouse embryonic fibroblasts
cell type
mouse embryonic fibroblasts
genotype/variation
PIN1 knockout
starved/stimulated
Stimulated

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was performed using the Omni-ATAC protocol (Corces et al., 2017).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18196046
Reads aligned (%)
93.5
Duplicates removed (%)
42.0
Number of peaks
11005 (qval < 1E-05)

mm9

Number of total reads
18196046
Reads aligned (%)
93.4
Duplicates removed (%)
42.0
Number of peaks
10967 (qval < 1E-05)

Base call quality data from DBCLS SRA