Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ESC E14
ChIP
BirA cells (mock)
cell type
embryonic stem cells
developmental stage
E14

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was treated with EpiTect Bisulfite Kits (Qiagen) Chromatin from fixed cells was extracted with 1% SDS buffer and sonicated for 20' prior immunoprecipiattion step (detailed description is in Material and Methods) Library were perfomed using NEBNext ChIP-Seq Library Prep Master Mix Set (NEB), following manufacturer instructions

Sequencing Platform

instrument_model
Illumina HiScanSQ

mm10

Number of total reads
25626980
Reads aligned (%)
84.6
Duplicates removed (%)
80.5
Number of peaks
300 (qval < 1E-05)

mm9

Number of total reads
25626980
Reads aligned (%)
84.5
Duplicates removed (%)
80.7
Number of peaks
301 (qval < 1E-05)

Base call quality data from DBCLS SRA