Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
embryoid bodies
antibody
H3K27me3 IP (abcam 6002)
cell type
ESC induced to differentiate by the Hanging Drop Method, LIF removal for 8 days

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Formaldehyde cross-linking 1,1% for 10 minutes. Libraries were prepared accordingly to manufactures (TruSeq ChIP sample Prep Kit, Illumina). Sequencing was performed on Hi-Seq 2500 Illumina single reads 100bp.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
26575175
Reads aligned (%)
98.8
Duplicates removed (%)
7.8
Number of peaks
471 (qval < 1E-05)

mm9

Number of total reads
26575175
Reads aligned (%)
98.7
Duplicates removed (%)
7.8
Number of peaks
470 (qval < 1E-05)

Base call quality data from DBCLS SRA