SRX480406
UBF ChIP seq in HEMCs

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
HMEC
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

isolate
CloneticsTM Mammary Epithelial Cell Systems
age
Not Avialable
biomaterial_provider
Elenbaas et al., Gene Dev, 2001
sex
not determined
tissue
epithelial
cell_line
the human primary mammary epithelial cell line (HMEC) immortalised by expressing hTERT, the catalytical subunit of telomerase
cell_type
Mammary epithelial Cells
sample_type
Cell Culture

Sequenced DNA Library

library_name
UBF ChIP in HMECs
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
75271309
Reads aligned (%)
87.5
Duplicates removed (%)
31.3
Number of peaks
4395 (qval < 1E-05)

hg19

Number of total reads
75271309
Reads aligned (%)
85.4
Duplicates removed (%)
33.5
Number of peaks
2462 (qval < 1E-05)

Base call quality data from DBCLS SRA