SRX4797235
ChIP-seq of mus musculus: Young fibroblast culture

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Others
Cell type
Ear fibroblasts
NA
NA

Attributes by original data submitter

Sample

strain
B57BL/6
age
3 months
sex
male
tissue
Ear
biomaterial_provider
Stanford University
cell_type
Ear fibroblast culture, passage 3
collected_by
2/6/2013
genotype
WT
sample_type
ChIP-seq
seq_sample
seq_sample_90

Sequenced DNA Library

library_name
Young_Fib_5_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21376578
Reads aligned (%)
94.8
Duplicates removed (%)
37.7
Number of peaks
20312 (qval < 1E-05)

mm9

Number of total reads
21376578
Reads aligned (%)
94.6
Duplicates removed (%)
37.8
Number of peaks
20332 (qval < 1E-05)

Base call quality data from DBCLS SRA