SRX4797233
ChIP-seq of mus musculus: Old fibroblast culture

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Others
Cell type
Ear fibroblasts
NA
NA

Attributes by original data submitter

Sample

strain
B57BL/6
age
29 months
sex
male
tissue
Ear
biomaterial_provider
Stanford University
cell_type
Ear fibroblast culture, passage 3
collected_by
2/6/2013
genotype
WT
sample_type
ChIP-seq
seq_sample
seq_sample_96

Sequenced DNA Library

library_name
Old_Fib_4_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
43662273
Reads aligned (%)
98.9
Duplicates removed (%)
29.3
Number of peaks
254 (qval < 1E-05)

mm9

Number of total reads
43662273
Reads aligned (%)
98.8
Duplicates removed (%)
29.4
Number of peaks
246 (qval < 1E-05)

Base call quality data from DBCLS SRA