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For mm10
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Rela
wikigenes
PDBj
CellType: Vascular smooth muscle cells
ATCC
MeSH
RIKEN BRC
SRX4796010
GSM3416157: IFN alpha+LPS-stimulated Vascular Smooth Muscle Cells (8h/4h) [mm VSMC IFNA8h LPS4h p65 B]; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Rela
Cell type
Cell type Class
Cardiovascular
Cell type
Vascular smooth muscle cells
NA
NA
Attributes by original data submitter
Sample
source_name
aorta
strain/background
C57BL/6
genotype/variation
Wild type
cell type
Vascular Smooth Muscle Cells
stimulation
8h, 1000U/ml, murine IFN alpha; 4h, 1ug/ml, LPS
chip antibody
NFKB p65 (Cell Signaling Technology, cat# 6956, lot# 7)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was carried out as previously described (Siersbaek et al. 2012), with minor modifications. Indexed ChIP DNA libraries were prepared following the TruSeq™ ChIP Library Preparation kit (Illumina, Inc.) protocol.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
28065370
Reads aligned (%)
95.6
Duplicates removed (%)
27.3
Number of peaks
46338 (qval < 1E-05)
mm9
Number of total reads
28065370
Reads aligned (%)
95.6
Duplicates removed (%)
27.4
Number of peaks
46300 (qval < 1E-05)
Base call quality data from
DBCLS SRA