Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Gonad
Cell type
Sperm
NA
NA

Attributes by original data submitter

Sample

source_name
Sperm, WT, H3K4me2 ChIP
strain/background
C57BL/6
genotype/variation
wildtype
tissue
sperm
chip antibody
anti-H3K4me2 (Millipore 07-030)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Mouse spermatozoa were collected by swim-up procedure. Mono-nucleosomal chromatin samples were prepared by MNase treatment. ChIP experiments with an antibody against H3K4me2 were performed on native chromatin. ChIP-seq and MNase-seq libraries were produced using the Illumina ChIP-seq DNA Sample Prep Kit (Cat# IP-102-1001).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
13905560
Reads aligned (%)
89.1
Duplicates removed (%)
15.0
Number of peaks
29973 (qval < 1E-05)

mm9

Number of total reads
13905560
Reads aligned (%)
89.0
Duplicates removed (%)
15.1
Number of peaks
30022 (qval < 1E-05)

Base call quality data from DBCLS SRA