Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
primary prostate cancer
chip antibody
AR (Santa Cruz, catalog# sc-816, mix of 4 lot#s B2114, H2914, A0515, J0614)
patient id
P618T
case/control
Case
tissue
primary prostate cancer

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
22496530
Reads aligned (%)
90.8
Duplicates removed (%)
3.5
Number of peaks
10619 (qval < 1E-05)

hg38

Number of total reads
22496530
Reads aligned (%)
92.2
Duplicates removed (%)
2.6
Number of peaks
10594 (qval < 1E-05)

Base call quality data from DBCLS SRA