Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Larvae
Cell type
3rd instar brain
NA
NA

Attributes by original data submitter

Sample

source_name
Brain
genotype
P[nerfin-1.GFP-NLS.SV-40] iA
tissue
FACS sorted GFP+ cells from CNS
developmental stage
Wandering third instar larvae

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were lysed and nuclei pelleted. Nuclei were subjected to tagmentation (Nextera kit, Illumina). PCR amplification of purified DNA was performed using forward and reverse indexing primers and HotStart KAPA ready mix (13 cycles). Fragments between 200-700bp of the amplified and purified libraries were size-selected using a Pippin Prep instrument.

Sequencing Platform

instrument_model
NextSeq 500

dm6

Number of total reads
49258830
Reads aligned (%)
74.0
Duplicates removed (%)
22.6
Number of peaks
17627 (qval < 1E-05)

dm3

Number of total reads
49258830
Reads aligned (%)
74.2
Duplicates removed (%)
19.3
Number of peaks
17412 (qval < 1E-05)

Base call quality data from DBCLS SRA