Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Hepatocytes
MeSH Description
The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Attributes by original data submitter

Sample

isolate
Hu8080
age
19
biomaterial_provider
Life Technologies
sex
male
tissue
hepatocytes

Sequenced DNA Library

library_name
RXR_Rifampin
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
33567985
Reads aligned (%)
98.7
Duplicates removed (%)
13.1
Number of peaks
31056 (qval < 1E-05)

hg19

Number of total reads
33567985
Reads aligned (%)
98.2
Duplicates removed (%)
13.5
Number of peaks
30979 (qval < 1E-05)

Base call quality data from DBCLS SRA