SRX4777954
GSM3407051: Input R1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
P5424
NA
NA

Attributes by original data submitter

Sample

source_name
Input
cell line
P5424
cell type
pro-T-cell line
genotype/variation
Rag2 and P53 knockout

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The extraction of total RNA was performed using the RNeasy Plus Mini kit (Qiagen) according to the protocol recommended by the supplier. libraries preparation using the TruSeq RNA Library Prep Kit v2 (Illumina).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17601291
Reads aligned (%)
97.3
Duplicates removed (%)
6.2
Number of peaks
148 (qval < 1E-05)

mm9

Number of total reads
17601291
Reads aligned (%)
97.2
Duplicates removed (%)
6.4
Number of peaks
110 (qval < 1E-05)

Base call quality data from DBCLS SRA