Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
chip-antibody
rabbit polyclonal, SPI1/PU.1, Santa Cruz sc-22805

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed using 1% formaldehyde or 1% formaldehyde at 37C Libraries were generated following Illumina's DNA Sample Prep Kit protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
41751865
Reads aligned (%)
76.1
Duplicates removed (%)
10.3
Number of peaks
33759 (qval < 1E-05)

hg38

Number of total reads
41751865
Reads aligned (%)
77.6
Duplicates removed (%)
9.7
Number of peaks
32817 (qval < 1E-05)

Base call quality data from DBCLS SRA