Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3T11ph

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate adenocarcinoma
cell line
LNCaP cells
treatment
R1881
antibody
H3 phospho T11, AbCam (ab5168)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
LNCaP cells were cultured for 3 h in the presence of 10 nM R1881 or vehicle control as indicated and cross-linked by the addition of 1/10 volume of freshly-prepared formaldehyde cross-linking buffer (11% formaldehyde, 10 mM HEPES-KOH [pH 7.6], 100mM NaCl, 1 mM EDTA, 0.5 mM EGTA) to cell culture dishes and incubated for 10 min at room temperature.Glycine was added to a final concentration of 125 mM and cells were incubated for 5 min at room temperature. The samples were sonicated and the sonicated lysates were subjected to immunoprecipitation using the indicated antibodies and protein G Dynabeads. Precipitates were washed and DNA was extracted. KAPA Library Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
16602878
Reads aligned (%)
96.6
Duplicates removed (%)
19.3
Number of peaks
661 (qval < 1E-05)

hg19

Number of total reads
16602878
Reads aligned (%)
95.9
Duplicates removed (%)
21.2
Number of peaks
763 (qval < 1E-05)

Base call quality data from DBCLS SRA