Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Embryo
Cell type
5-13h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
CTCF_PS7
tissue
embryo
age
5-13h
tissue subtype
parasegment 7
chip antibody
anti-CTCF

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were digested with MNase, solubilized and ChIP performed using the appropriate antibody. Libraries were prepared as described in Bowman et al., 2013.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
29965807
Reads aligned (%)
67.2
Duplicates removed (%)
50.4
Number of peaks
5322 (qval < 1E-05)

dm6

Number of total reads
29965807
Reads aligned (%)
63.3
Duplicates removed (%)
53.0
Number of peaks
1793 (qval < 1E-05)

Base call quality data from DBCLS SRA