SRX4740096
GSM3401395: Input ChIP-seq in RD1 cells, rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
Brain pericytes
NA
NA

Attributes by original data submitter

Sample

source_name
RD1 cells
cell type
Brain pericytes
treatment
None
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was done essentially as previously described (Giaimo et al. Jove 2017, doi: 10.3791/55907). Library-prep kit: Diagenode MicropPlex Library Preparation kit v2 (C05010012).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40222614
Reads aligned (%)
94.0
Duplicates removed (%)
17.0
Number of peaks
285 (qval < 1E-05)

mm9

Number of total reads
40222614
Reads aligned (%)
93.8
Duplicates removed (%)
17.3
Number of peaks
255 (qval < 1E-05)

Base call quality data from DBCLS SRA