Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BAP1

Cell type

Cell type Class
Pancreas
Cell type
PANC-1
Tissue
Pancreas/Duct
Disease
Epithelioid Carcinoma

Attributes by original data submitter

Sample

source_name
pancreas
cell line
PANC1
cell type
human pancreatic cancer cell line
treatment
none
chip antibody
BAP1 (D1W9B) (ChIP), Cell Signaling Technology, Cat# 78105
input used for data normalization
Input#2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with the indicated antibodies. Libraries were prepared according to NEBNext® Ultra™ II DNA Library Prep Kit for Illumina and libraries were sequenced on the HiSeq4000 platform.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
38556361
Reads aligned (%)
68.4
Duplicates removed (%)
18.9
Number of peaks
990 (qval < 1E-05)

hg38

Number of total reads
38556361
Reads aligned (%)
70.2
Duplicates removed (%)
17.7
Number of peaks
1766 (qval < 1E-05)

Base call quality data from DBCLS SRA