Antigen

Antigen Class

TFs and others

Antigen

BAP1

Cell type

Cell type Class

Pancreas

Cell type

PANC-1

Tissue

Pancreas/Duct

Disease

Epithelioid Carcinoma

Sample

source_name

pancreas

cell line

PANC1

cell type

human pancreatic cancer cell line

treatment

none

chip antibody

BAP1 (D1W9B) (ChIP), Cell Signaling Technology, Cat# 78105

input used for data normalization

Input#2

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with the indicated antibodies. Libraries were prepared according to NEBNext® Ultra™ II DNA Library Prep Kit for Illumina and libraries were sequenced on the HiSeq4000 platform.

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

38556361

Reads aligned (%)

85.4

Duplicates removed (%)

17.7

Number of peaks

1766 (qval < 1E-05)

hg19

Number of total reads

38556361

Reads aligned (%)

84.3

Duplicates removed (%)

18.9

Number of peaks

990 (qval < 1E-05)