Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF
cell type
MEF
passages
P2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was extracted with Trizol; ChIP DNA was extracted with Qiagen Gel Extraction kit; ATAC-seq DNA was extracted with Qiagen MinElute PCR purification kit RNA-seq libraries were prepared with TruSeq Stranded mRNA Library Prep Kit (Illumina, RS-122-2101); ChIP DNA libraries were constructed with ThruPLEX® DNA-seq Kit (Rubicon Genomics), ATAC-seq libraries were prepared with Illumina Nextera DNA Library Prep Kit (15028212).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
13964537
Reads aligned (%)
98.5
Duplicates removed (%)
10.2
Number of peaks
397 (qval < 1E-05)

mm9

Number of total reads
13964537
Reads aligned (%)
98.3
Duplicates removed (%)
10.3
Number of peaks
400 (qval < 1E-05)

Base call quality data from DBCLS SRA