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For mm10
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX4734086
GSM3399680: RNAPolII ChIP rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
Mouse embryonic stem cells
cell line
E14 cell line
cell type
embryonic stem cells
ip antibody
RNA polymerase II clone (Covance MMS126R-500)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were lysed using SDS-based lysis buffer and sonicated, protein-DNA complexes were then isolated with antibody. Immunoprecipitated protein-DNA complex were ligated with illumina-compatible adaptors, amplified by PCR and sequenced.
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
7862240
Reads aligned (%)
97.9
Duplicates removed (%)
9.4
Number of peaks
1363 (qval < 1E-05)
mm9
Number of total reads
7862240
Reads aligned (%)
97.7
Duplicates removed (%)
9.7
Number of peaks
1349 (qval < 1E-05)
Base call quality data from
DBCLS SRA