SRX4730272
GSM3398466: H3K36me3 n2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Cervical cancer
chip antibody
H3K36me3 (61101, Active Motif)
treatment
none
cell line
HeLa

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
see SINHCAF/FAM60A and SIN3A specifically repress HIF-2α expression, Biddlestone J et al 2018. PMID: 29784889 DNA libraries for ChIP sequening were prepared using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18191439
Reads aligned (%)
91.7
Duplicates removed (%)
2.3
Number of peaks
215 (qval < 1E-05)

hg19

Number of total reads
18191439
Reads aligned (%)
90.9
Duplicates removed (%)
3.3
Number of peaks
191 (qval < 1E-05)

Base call quality data from DBCLS SRA