Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me3

Cell type

Cell type Class
Others
Cell type
Olfactory epithelium
NA
NA

Attributes by original data submitter

Sample

source_name
olfactory epithelium_ChIP-seq
strain background
mixed
age
6-8 weeks
tissue
olfactory epithelium
chip antibody
Anti-H3K79me3
chip antibody vendor
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIP-seq experiments, nuclei were isolated from mouse olfactory epithelium and native ChIPs were performed using H3K79me3 antibody. For DHS-seq, nuclei were isolated from mouse olfactory epithelium and treated with 20U Dnase (DNase I, Invitrogen) for 3 min, reactions were stopped with EDTA and proteinase K treated overnight. Regions 100-500 bp were excised from agarose with Qiagen kit and library was constructed by Nugen Ultralow DR kit and PCR amplified for 25 cycles. 1 microgram library was hybridized to custom designed capture probes (Nimblegen SeqCap Design) targeting olfactory receptor enhancers, and capture was performed per the manufacturer's instructions. After elution from probes, library was amplified using Truseq adapters for 18 cycles using Phusion DNA Polymerase and sequenced. ChIP DNA was sonicated for 180 seconds on Covaris S220 and library constructed using Nugen Ultralow DR kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
20358165
Reads aligned (%)
3.0
Duplicates removed (%)
51.3
Number of peaks
85 (qval < 1E-05)

mm9

Number of total reads
20358165
Reads aligned (%)
98.5
Duplicates removed (%)
67.1
Number of peaks
479 (qval < 1E-05)

Base call quality data from DBCLS SRA