SRX472666
Trophoblast Stem Cells ; ChIPSeq H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

strain
CD1
dev_stage
Trophoblast stem cells
sample_type
ChIPSeq
label
TS_H3K4me3_ChIPSeq

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41256175
Reads aligned (%)
98.6
Duplicates removed (%)
23.8
Number of peaks
25628 (qval < 1E-05)

mm9

Number of total reads
41256175
Reads aligned (%)
98.4
Duplicates removed (%)
23.8
Number of peaks
25639 (qval < 1E-05)

Base call quality data from DBCLS SRA