SRX472662
Low pH treated CD45 positive Cells ; ChIPSeq input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
STAP cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6 x 129/sv
dev_stage
Oct3/4 expressing cells
sample_type
ChIPSeq
label
STAP_input DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38924902
Reads aligned (%)
98.5
Duplicates removed (%)
11.8
Number of peaks
577 (qval < 1E-05)

mm9

Number of total reads
38924902
Reads aligned (%)
98.2
Duplicates removed (%)
11.8
Number of peaks
613 (qval < 1E-05)

Base call quality data from DBCLS SRA