SRX472660
Low pH treated CD45 positive Cells ; ChIPSeq H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
STAP cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6 x 129/sv
dev_stage
Oct3/4 expressing cells
sample_type
ChIPSeq
label
STAP_H3K4me3_ChIPSeq

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
49615521
Reads aligned (%)
98.3
Duplicates removed (%)
18.9
Number of peaks
29525 (qval < 1E-05)

mm9

Number of total reads
49615521
Reads aligned (%)
98.1
Duplicates removed (%)
18.9
Number of peaks
29505 (qval < 1E-05)

Base call quality data from DBCLS SRA