SRX472653
CD45 positive Cells ; ChIPSeq input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD45 positive cells
NA
NA

Attributes by original data submitter

Sample

strain
Oct3/4::gfp C57BL/6
dev_stage
CD45 positive cells derived from spleen
sample_type
ChIPSeq
label
CD45 positive cell_input DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
60589560
Reads aligned (%)
98.8
Duplicates removed (%)
13.0
Number of peaks
568 (qval < 1E-05)

mm9

Number of total reads
60589560
Reads aligned (%)
98.6
Duplicates removed (%)
12.9
Number of peaks
694 (qval < 1E-05)

Base call quality data from DBCLS SRA