Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic face
NA
NA

Attributes by original data submitter

Sample

source_name
Maxillary arch Cells
tissue
Maxillary arch
developmental stage
E11.5
chip antibody
none
strain
CD-1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Maxillary arches were dissected from 47 of E11.5 CD-1 wild type embryos in phosphate-buffered saline (PBS), and snap-frozen on dry ice The tissue was then sent to Active Motif, Inc. (Carlsbad, CA) for HistonePathTM service, which included chromatin preparation, ChIP-seq for H3K27ac, and bioinformatics analysis of the sequencing result to identify H3K27ac-enriched genomic regions (peaks). 20 μg of the maxillary arch chromatin was used for ChIP with a rabbit polyclonal anti-H3K27Ac antibody (Active Motif, cat# AM 39133). Libraries for Illumina sequencing (Hi-Seq) were prepared from ChIP DNA and input chromatin as described (Labhart et al., 2005)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

mm10

Number of total reads
33045496
Reads aligned (%)
97.7
Duplicates removed (%)
5.9
Number of peaks
502 (qval < 1E-05)

mm9

Number of total reads
33045496
Reads aligned (%)
97.5
Duplicates removed (%)
6.0
Number of peaks
502 (qval < 1E-05)

Base call quality data from DBCLS SRA