SRX471251
GSM1328265: CRE5.K27me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
Leukemic bone marrow
NA
NA

Attributes by original data submitter

Sample

source_name
Leukemic bone marrow
background strain
C57BL/6
tissue
bone marrow
diagnosis
leukemia
chip antibody
07-449 Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina TruSeq DNA sample preparation protocol for the library prep

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38675564
Reads aligned (%)
95.0
Duplicates removed (%)
7.3
Number of peaks
328 (qval < 1E-05)

mm9

Number of total reads
38675564
Reads aligned (%)
94.8
Duplicates removed (%)
7.3
Number of peaks
363 (qval < 1E-05)

Base call quality data from DBCLS SRA