SRX4705539
ATAC-seq of primary human plasmacytoid dendritic cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Plasmacytoid dendritic cells
NA
NA

Attributes by original data submitter

Sample

isolate
PB1006
age
28
biomaterial_provider
AllCells
sex
female
tissue
Peripheral Blood
cell_subtype
Plasmacytoid dendritic cell

Sequenced DNA Library

library_name
pDC_RepB
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
58281367
Reads aligned (%)
31.4
Duplicates removed (%)
58.4
Number of peaks
9233 (qval < 1E-05)

hg19

Number of total reads
58281367
Reads aligned (%)
31.1
Duplicates removed (%)
58.9
Number of peaks
9180 (qval < 1E-05)

Base call quality data from DBCLS SRA