SRX470062
GSM1327156: Nanog-sg3-0.2ug-IP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell type
embryonic stem cells
cell line
V6.5 + dCas9
strain
C57BL/6-129
treatment
transfected with 0.2 ug sgRNA Nanog-sg3
chip antibody
anti-HA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Phenol choroform extraction Aglient ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16074032
Reads aligned (%)
55.0
Duplicates removed (%)
3.6
Number of peaks
4861 (qval < 1E-05)

mm9

Number of total reads
16074032
Reads aligned (%)
54.9
Duplicates removed (%)
3.8
Number of peaks
4942 (qval < 1E-05)

Base call quality data from DBCLS SRA