SRX470059
GSM1327153: Nanog-sg3-transient-Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell type
embryonic stem cells
cell line
V6.5
strain
C57BL/6-129
treatment
transfected with 20 ug sgRNA Nanog-sg3 and 20 ug dCas9
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Phenol choroform extraction Aglient ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
58783049
Reads aligned (%)
95.4
Duplicates removed (%)
6.9
Number of peaks
5082 (qval < 1E-05)

mm9

Number of total reads
58783049
Reads aligned (%)
95.2
Duplicates removed (%)
6.9
Number of peaks
5331 (qval < 1E-05)

Base call quality data from DBCLS SRA