SRX4677015
GSM3387261: Lung ILC2 WT IL2 7 33 input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Innate lymphoid cells
NA
NA

Attributes by original data submitter

Sample

source_name
Lung ILC2
strain
C57BL/6
genotype
WT
tissue
Lung
cell type
Group 2 innate lymphoid cells (ILC2s)
antibody
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were purified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were created from the DNA with NEBNext ChIP-seq Library Prep Master Mix set for Illumina Kit (NEB).

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23073906
Reads aligned (%)
99.1
Duplicates removed (%)
27.1
Number of peaks
526 (qval < 1E-05)

mm9

Number of total reads
23073906
Reads aligned (%)
98.9
Duplicates removed (%)
27.2
Number of peaks
589 (qval < 1E-05)

Base call quality data from DBCLS SRA