Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARNT

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Adenocarcinomic human alveolar basal epithelial cell line
tissue
lung
treatment
0.5% O2 16h
type of sample
ChIP
chip antibody
ARNT/HIF-1β monoclonal antibody (NB100-124, Novus)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
20245687
Reads aligned (%)
76.6
Duplicates removed (%)
14.1
Number of peaks
4002 (qval < 1E-05)

hg38

Number of total reads
20245687
Reads aligned (%)
77.0
Duplicates removed (%)
13.9
Number of peaks
3958 (qval < 1E-05)

Base call quality data from DBCLS SRA