Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
WT-Eff
strain background
C57BL/6
genotype/variation
TCF7+/+
tissue
Spleen and Lymph node
cell type
CD8+ T cells
cell subtype
TCRb+CD4-CD8+CD44+CD62L-CD25-

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cell lysates were treated with Tn5 transposease and DNA was purified following the protocol outlined in Buenrostro et al. 2015 Curr. Protoc. Mol. Biol. 109:21.29.1-9 and Buenrostro et al 2013 Nat. Med. 10(12):1213-8. Libraries were generated following the following the protocol outlined in Buenrostro et al. 2015 Curr. Protoc. Mol. Biol. 109:21.29.1-9 and Buenrostro et al 2013 Nat. Med. 10(12):1213-8.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
22090165
Reads aligned (%)
84.4
Duplicates removed (%)
32.6
Number of peaks
16055 (qval < 1E-05)

mm9

Number of total reads
22090165
Reads aligned (%)
84.3
Duplicates removed (%)
32.7
Number of peaks
16008 (qval < 1E-05)

Base call quality data from DBCLS SRA