SRX4670703
GSM3383947: Beko Input GSI; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
BEko
NA
NA

Attributes by original data submitter

Sample

source_name
Beko pre-T cell line
cell line
Beko pre-T
chip antibody
none
treatment
24 hours with 10 mg/ml DAPT (GSI).

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was done essentially as previously described (Giaimo et al. Jove 2017, doi: 10.3791/55907) Lybrary-prep kit: Diagenode MicropPlex Library Preparation kit v2 (C05010012)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32898789
Reads aligned (%)
97.5
Duplicates removed (%)
17.8
Number of peaks
876 (qval < 1E-05)

mm9

Number of total reads
32898789
Reads aligned (%)
97.4
Duplicates removed (%)
18.1
Number of peaks
864 (qval < 1E-05)

Base call quality data from DBCLS SRA